VRISD Bioinformatics
Internal Web Page
Local Tools
Simple BLAT Query
Batch BLAST to NCBI
Ebi's Peptide Blaster
FirstEF (First Exon Finder)
MAFFT Multiple Alignments
MEME and MAST 3.0.3
Primer3
YPPPPS
YAPPPPS
Primer Express
RepeatMasker
TMPred
Protein Translators
Glimmer gene prediction
Off-Site Tools
EMBL-EBI's WU-Blast2
PCR Suite based on Primer3
Pasteur Institute (many useful tools)
ch.EMBnet.org
NCBI's Glimmer server
Gene Lookup
Gene Lynx
- gene-lookup tool
MatchMiner
- batch gene-lookup tool
SOURCE
- batch gene-lookup tool
Genome Browsers
Ensembl
UCSC Genome Browser
NCBI Map Viewer
Misc. Documents
MySQL Manual
Linux Docs
Perl Tutorial
Core Services
Genomics Core (Xiao-Qin):
PowerPoint
PDF
Genomics Core (Yipeng):
PowerPoint
PDF
Bioinformatics Core (Fred):
PowerPoint
PDF
Other Links
External Bioinformatics Web Site
Bioinformatics FTP files (read-only)
System Administration
Local Database Access:
phpMyAdmin (read-only access)
phpMyAdmin-2.5.5
phpMyAdmin-2.7.0-beta1
phpMyAdmin-2.11.1
phpPgAdmin